Chemical Principles: The Quest for Insight. 4th ed. New York

Course Description
This course provides an introduction to the chemistry of biological, inorganic, and organic molecules. The emphasis is on basic principles of atomic and molecular electronic structure, thermodynamics, acid-base and redox equilibria, chemical kinetics, and catalysis.
In an effort to illuminate connections between chemistry and biology, a list of the biology-, medicine-, and MIT research-related examples used in 5.111 is provided in Biology-Related Examples
Lecture Notes
Lecture notes (with blanks) are provided for each lecture. Students are expected to follow along during the lecture in order to fill in the blanks in the notes.
Required Textbook:
Atkins, Peter, and Loretta Jones. Chemical Principles: The Quest for Insight. 4th ed. New York, NY: W.H. Freeman and Company, 2007. ISBN: 9781429209656.
The reading assignment listed for the first session is a review of information you are expected to know before you begin the class. This information is not discussed during lecture.
In addition, no lecture notes were provided for the first session. The handout associated with that lecture is an overview of the class format and expectations.
SES #
TOPICS
READINGS
LECTURE NOTES
L1
The importance of chemical principles
Section A.1
Sections B.3-B.4
Sections C-H
Sections L-M
(PDF)
L2
Discovery of electron and nucleus, need for quantum mechanics
Sections A.2-A.3
Sections B.1-B.2
Section 1.1
(PDF)
L3
Wave-particle duality of light
Sections 1.2 and 1.4
(PDF)
L4
Wave-particle duality of matter, Schrödinger equation
Sections 1.5-1.6
(PDF)
L5
Hydrogen atom energy levels
Sections 1.3, 1.7 up to equation 9b, and 1.8
(PDF)
L6
Hydrogen atom wavefunctions (orbitals)
Section 1.9
L7
p-orbitals
Sections 1.10-1.11
(PDF)
L8
Multelectron atoms and electron configurations
Sections 1.12-1.13
(PDF)
L9
Periodic trends
Sections 1.14-1.18, and 1.20
L10
Periodic trends continued; Covalent bonds
Sections 2.5-2.6, and 2.14-2.16
L11
Lewis structures
Sections 2.7-2.8
(PDF)
L12
Exceptions to Lewis structure rules; Ionic bonds
Sections 2.3 and 2.9-2.12
L13
Polar covalent bonds; VSEPR theory
Sections 3.1-3.2
L14
Molecular orbital theory
Sections 3.8-3.11
(PDF)
L15
Valence bond theory and hybridization
Sections 3.4-3.7
L16
Determining hybridization in complex molecules; Termochemistry and bond energies/bond enthalpies
Sections 6.13, 6.15-6.18, and 6.20
(PDF)
L17
Entropy and disorder
Sections 7.1-7.2, 7.8, 7.12-7.13, and 7.15
(PDF)
L18
Free energy and control of spontaneity
Section 7.16
(PDF)
L19
Chemical equilibrium
Sections 9.0-9.9
(PDF)
L20
Le Chatelier's principle and applications to blood-oxygen levels
Sections 9.10-9.13
(PDF)
L21
Acid-base equilibrium: Is MIT water safe to drink?
Chapter 10
(PDF)
L22
Chemical and biological buffers
Chapters 10 and 11
(PDF)
L23
Acid-base titrations
Chapter 11
(PDF)
L24
Balancing oxidation/reduction equations
Section K
Chapter 12
(PDF)
L25
Electrochemical cells
Chapter 12
(PDF)
L26
Chemical and biological oxidation/reduction reactions
Chapter 12
(PDF)
L27
Transition metals and the treatment of lead poisoning
pp. 669-681
(PDF)
L28
Crystal field theory
pp. 681-683
L29
Metals in biology
pp. 631-637
L30
Magnetism and spectrochemical theory
Chapter 16
(PDF)
L31
Rate laws
Sections 13.1-13.5
(PDF)
L32
Nuclear chemistry and elementary reactions
pp. 498-501 and 660-664
(PDF)
L33
Reaction mechanism
pp. 549-552
(PDF)
L34
Temperature and kinetics
Sections 13.11-13.13
(PDF)
L35
Enzyme catalysis
Sections 13.14-13.15
(PDF)
L36
Biochemistry
(PDF)
Course Description
This course provides an introduction to the chemistry of biological, inorganic, and organic molecules. The emphasis is on basic principles of atomic and molecular electronic structure, thermodynamics, acid-base and redox equilibria, chemical kinetics, and catalysis.
In an effort to illuminate connections between chemistry and biology, a list of the biology-, medicine-, and MIT research-related examples used in 5.111 is provided in Biology-Related Examples
Lecture Notes
Lecture notes (with blanks) are provided for each lecture. Students are expected to follow along during the lecture in order to fill in the blanks in the notes.
Required Textbook:
Atkins, Peter, and Loretta Jones. Chemical Principles: The Quest for Insight. 4th ed. New York, NY: W.H. Freeman and Company, 2007. ISBN: 9781429209656.
The reading assignment listed for the first session is a review of information you are expected to know before you begin the class. This information is not discussed during lecture.
In addition, no lecture notes were provided for the first session. The handout associated with that lecture is an overview of the class format and expectations.
SES # | TOPICS | READINGS | LECTURE NOTES |
L1 | The importance of chemical principles | Section A.1
Sections B.3-B.4
Sections C-H
Sections L-M | (PDF) |
L2 | Discovery of electron and nucleus, need for quantum mechanics | Sections A.2-A.3
Sections B.1-B.2
Section 1.1 | (PDF) |
L3 | Wave-particle duality of light | Sections 1.2 and 1.4 | (PDF) |
L4 | Wave-particle duality of matter, Schrödinger equation | Sections 1.5-1.6 | (PDF) |
L5 | Hydrogen atom energy levels | Sections 1.3, 1.7 up to equation 9b, and 1.8 | (PDF) |
L6 | Hydrogen atom wavefunctions (orbitals) | Section 1.9 | |
L7 | p-orbitals | Sections 1.10-1.11 | (PDF) |
L8 | Multelectron atoms and electron configurations | Sections 1.12-1.13 | (PDF) |
L9 | Periodic trends | Sections 1.14-1.18, and 1.20 | |
L10 | Periodic trends continued; Covalent bonds | Sections 2.5-2.6, and 2.14-2.16 | |
L11 | Lewis structures | Sections 2.7-2.8 | (PDF) |
L12 | Exceptions to Lewis structure rules; Ionic bonds | Sections 2.3 and 2.9-2.12 | |
L13 | Polar covalent bonds; VSEPR theory | Sections 3.1-3.2 | |
L14 | Molecular orbital theory | Sections 3.8-3.11 | (PDF) |
L15 | Valence bond theory and hybridization | Sections 3.4-3.7 | |
L16 | Determining hybridization in complex molecules; Termochemistry and bond energies/bond enthalpies | Sections 6.13, 6.15-6.18, and 6.20 | (PDF) |
L17 | Entropy and disorder | Sections 7.1-7.2, 7.8, 7.12-7.13, and 7.15 | (PDF) |
L18 | Free energy and control of spontaneity | Section 7.16 | (PDF) |
L19 | Chemical equilibrium | Sections 9.0-9.9 | (PDF) |
L20 | Le Chatelier's principle and applications to blood-oxygen levels | Sections 9.10-9.13 | (PDF) |
L21 | Acid-base equilibrium: Is MIT water safe to drink? | Chapter 10 | (PDF) |
L22 | Chemical and biological buffers | Chapters 10 and 11 | (PDF) |
L23 | Acid-base titrations | Chapter 11 | (PDF) |
L24 | Balancing oxidation/reduction equations | Section K
Chapter 12 | (PDF) |
L25 | Electrochemical cells | Chapter 12 | (PDF) |
L26 | Chemical and biological oxidation/reduction reactions | Chapter 12 | (PDF) |
L27 | Transition metals and the treatment of lead poisoning | pp. 669-681 | (PDF) |
L28 | Crystal field theory | pp. 681-683 | |
L29 | Metals in biology | pp. 631-637 | |
L30 | Magnetism and spectrochemical theory | Chapter 16 | (PDF) |
L31 | Rate laws | Sections 13.1-13.5 | (PDF) |
L32 | Nuclear chemistry and elementary reactions | pp. 498-501 and 660-664 | (PDF) |
L33 | Reaction mechanism | pp. 549-552 | (PDF) |
L34 | Temperature and kinetics | Sections 13.11-13.13 | (PDF) |
L35 | Enzyme catalysis | Sections 13.14-13.15 | (PDF) |
L36 | Biochemistry | (PDF) |
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